Assays

What is an Assay?

75 Assays visible to you, out of a total of 113

Genome wide (GW) and validation CRISPR screens (rat)

TRR 274: Checkpoints of Central Nervous System Recovery

No description specified

Submitter: Camilla Giudici

Assay type: CRISPR Screen

Technology type: Technology Type

Investigation: C02 - In vivo detection and targeting of neuroe...

Study: A genome-wide in vivo CRISPR screen identifies ...

Organisms: Rat

SOPs: No SOPs

Data files: Genome wide (GW) and validation CRISPR screens ...

Snapshots: No snapshots

Created: 6th Aug 2026 at 07:46, Last updated: 6th Aug 2026 at 08:00

Expression profiling: Microarray (zebrafish)

TRR 274: Checkpoints of Central Nervous System Recovery

No description specified

Submitter: Camilla Giudici

Assay type: Transcriptomics

Technology type: Microarray

Investigation: B05 - Cross-talk between innate immunity and ex...

Study: Innate Immune Pathways Promote Oligodendrocyte ...

Organisms: No organisms

SOPs: No SOPs

Data files: Activation of innate immune pathways after brai...

Snapshots: No snapshots

Created: 6th Aug 2026 at 07:20, Last updated: 6th Aug 2026 at 07:21

Data availabilty

TRR 274: Checkpoints of Central Nervous System Recovery

No description specified

Submitter: Camilla Giudici

Assay type: Transcriptomics

Technology type: Technology Type

Investigation: Z02 - Genomics and Bioinformatics Platform

Study: A multi-modal single-cell and spatial expressio...

Organisms: No organisms

SOPs: No SOPs

Data files: All data, Transcriptome reference, cellxgene

Snapshots: No snapshots

Created: 4th Aug 2026 at 12:16, Last updated: 4th Aug 2026 at 12:23

TRR 274: Checkpoints of Central Nervous System Recovery

No description specified

Submitter: Camilla Giudici

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: C06 - Understanding checkpoints of interneuron ...

Study: Brain-wide microstrokes affect the stability of...

Organisms: No organisms

SOPs: No SOPs

Data files: Raw Data

Snapshots: No snapshots

Created: 4th Aug 2026 at 08:10, Last updated: 4th Aug 2026 at 08:11

Brain-wide microstrokes affect the stability of memory circuits in the hippocampus

TRR 274: Checkpoints of Central Nervous System Recovery

No description specified

Submitter: Camilla Giudici

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: C06 - Understanding checkpoints of interneuron ...

Study: Brain-wide microstrokes affect the stability of...

Organisms: No organisms

SOPs: No SOPs

Data files: https://dandiarchive.org/dandiset/001184/0.2408...

Snapshots: No snapshots

Created: 4th Aug 2026 at 08:09, Last updated: 4th Aug 2026 at 08:10

Wahl-lab/Heiser_BrainwideMicrostrokes

TRR 274: Checkpoints of Central Nervous System Recovery

Code and sample data supporting Heiser et al. "Brain-wide microstrokes affect the stability of memory circuits in the hippocampus", submitted to Nature Communications. The code and sample data is published for transparency and reproducibility and is not directly executable.

Submitter: Camilla Giudici

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: C06 - Understanding checkpoints of interneuron ...

Study: Brain-wide microstrokes affect the stability of...

Organisms: No organisms

SOPs: No SOPs

Data files: Wahl-lab/Heiser_BrainwideMicrostrokes: Publication

Snapshots: No snapshots

Created: 4th Aug 2026 at 08:07, Last updated: 4th Aug 2026 at 08:08

Expression profiling: scRNA-seq (human)

TRR 274: Checkpoints of Central Nervous System Recovery

To investigate TFEB-dependent expression in BCR-stimulated and resting B cells, CRISPR/Cas9 knockout cell lines were established and subjected to RNA sequencing analysis

Submitter: Camilla Giudici

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: A08 - Deciphering the heterogeneity of B-lympho...

Study: TFEB activation hallmarks antigenic experience ...

Organisms: Human

SOPs: No SOPs

Data files: The influence of the transcription factor EB fo...

Snapshots: No snapshots

Created: 3rd Aug 2026 at 13:03, Last updated: 3rd Aug 2026 at 13:06

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