SEEK ID: https://goeseek.gwdguser.de/people/1
Locations: United Kingdom , Germany
ORCID: https://orcid.org/0000-0002-9895-2469
Joined: 2nd Feb 2022
Expertise: Data Management, Bioinformatics, Molecular Biology, Microbiology
Tools: Proteomics, sequencing, RNA-seq, Genomics
Roles
Admin
Project administrator
- CRC1002: Modulatory Units in Heart Failure
- Cardiomyocyte tissues
- TRR 274: Checkpoints of Central Nervous System Recovery
- SFB 1190: Compartmental Gates and Contact Sites in Cells
- MBExC: Multiscale Bioimaging
- CRC 1565: Molecular mechanisms and interplay of gene expression processes
- Default Project - for test purposes
Programme administrator
Related items
- Programmes (4)
- Projects (7)
- Institutions (3)
- Investigations (1+57)
- Studies (1+178)
- Assays (4+234)
- Data files (0+741)
- Publications (4)
- Sample types (0+2)
- Samples (0+16)
- Collections (0+1)
For test purposes only.
Projects: Default Project - for test purposes, TAVI test project
Web page: Not specified
Projects: MBExC: Multiscale Bioimaging
Web page: https://www.wikidata.org/wiki/Q48975698
Projects: Cardiomyocyte tissues, 12 months EHM project (Dittrich, Zimmermann)
Web page: Not specified
Projects: CRC1002: Modulatory Units in Heart Failure, TRR 274: Checkpoints of Central Nervous System Recovery, SFB 1190: Compartmental Gates and Contact Sites in Cells
Web page: Not specified
Programme: Default programme - for test purposes
Public web page: Not specified
Organisms: Not specified
https://gepris.dfg.de/gepris/projekt/469281184
While gene expression was traditionally viewed as a linear pathway of consecutive steps, we now know that genome organization and transcription, RNA processing and modification, RNA-protein complex assembly, translation and quality control are highly interconnected processes. Many cross-regulation events occur even between non-consecutive steps of gene expression, and even between processes taking place in different cellular compartments.
This paradigm ...
Programme: This Project is not associated with a Programme
Public web page: https://sfb1565.uni-goettingen.de/
Organisms: Not specified
Programme: Cluster of Excellence
Public web page: https://mbexc.de/
Organisms: Human, Mouse, Rat, Saccharomyces cerevisiae (Yeast)
https://sfb1002.med.uni-goettingen.de/ (Research Data Platform) https://gepris.dfg.de/gepris/projekt/193793266?language=en (DFG Gepris entry) With a prevalence of between two and four percent, heart failure remains one of the most common diseases in Europe. Although tremendous progress has been made in its treatment, the morbidity and mortality of affected patients remains high. Advanced heart failure can still only be treated palliatively.We define modulatory units as cell-based and/or genetic ...
Programme: Sonderforschungsbereiche/Collaborative Research Centers
Public web page: https://herzzentrum.umg.eu/forschung/forschungsverbuende/sfb-1002/
Start date: 1st Jul 2012
End date: 30th Jun 2024
Programme: Other research project backgrounds
Public web page: Not specified
Organisms: ACTN2-Citrine Cardiomyocytes, Human, Mouse
https://rdp.sfb274.de/ (Research Data Platform) https://gepris.dfg.de/gepris/projekt/408885537 (DFG Gepris entry) The central nervous system (CNS) is a terminally differentiated tissue, where any insult carries a heightened risk - yet the tissue response to these insults is variable and can range from irreversible destruction to almost complete recovery. The rules that instruct these divergent outcomes are still unknown. The aim of this CRC is therefore to understand the biology of the multicellular ...
Programme: Sonderforschungsbereiche/Collaborative Research Centers
Public web page: https://www.sfb274.de/
https://gepris.dfg.de/gepris/projekt/318243743 Title: Wnt/beta-catenin/TCF-dependent transcriptional regulation in heart failure (Wnt/beta-catenin/TCF-abhängige Transkriptionsregulation in der Herzinsuffizienz) Wnt/ß-catenin activation results in the development of cardiac dysfunction. In this project, the hypothesis will be tested that enhanced Wnt/ß-catenin activity triggers a cell-specific gene expression programs in cardiomyocytes (CM) and cardiac fibroblasts (FB), which contribute to ...
Submitter: Harald Kusch
Studies: A context-specific cardiac Beta-catenin and GATA4 interaction influences...
Assays: ChIP Seq, RNA Seq, echocardiographic analysis, immunocytochemistry
Snapshots: No snapshots
Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Corresponding publication:
https://sfb1002.med.uni-goettingen.de/production/literature/publications/201
(https://doi.org/10.1093/nar/gky049)
Submitter: Harald Kusch
Investigation: CRC1002 Project C07 (2016-2024)
Assays: ChIP Seq, RNA Seq, echocardiographic analysis, immunocytochemistry
Snapshots: No snapshots
Activation of the evolutionarily conserved, developmental Wnt pathway has been reported during maladaptive cardiac remodeling. Although the function of Wnt-transcriptional activation in development is well described, the consequences of Wnt pathway activation, as well as its cardiac-specific regulatory role in the adult heart, is largely unknown. We show that β-catenin and Transcription factor 7-like 2 (TCF7L2), the main nuclear components of the Wnt-transcriptional cascade, and their transcriptional ...
Submitter: Harald Kusch
Assay type: Gene Expression Profiling
Technology type: Chip-seq
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
Summary: Activation of the evolutionarily conserved, developmental Wnt pathway has been reported during maladaptive cardiac remodeling. Although the function of Wnt-transcriptional activation in development is well described, the consequences of Wnt pathway activation, as well as its cardiac-specific regulatory role in the adult heart, is largely unknown. We show that β-catenin and Transcription factor 7-like 2 (TCF7L2), the main nuclear components of the Wnt-transcriptional cascade, and their ...
Submitter: Harald Kusch
Assay type: Gene Expression Profiling
Technology type: Rna-seq
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 3 hidden items
Snapshots: No snapshots
Transaortic constriction (TAC) was done in 12-weeks-old mice. Pre-anesthetic and anesthetic agents are listed in Supplemental Table S2. The intervention was performed by tying a braided 5–0 polyviolene suture (Hugo Sachs Electronik) ligature around the aorta and a blunted 26-gauge needle and subsequent removal of the needle. For sham controls, the suture was not tied. To determine the level of pressure overload by aortic ligation, a high frequency Doppler probe was used to measure the ratio between ...
Submitter: Harald Kusch
Assay type: Echocardiographic analysis
Technology type: micro-ultrasound imaging
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
Submitter: Harald Kusch
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
Abstract (Expand)
Authors: L. Hosang, R. C. Canals, F. J. van der Flier, J. Hollensteiner, R. Daniel, A. Flugel, F. Odoardi
Date Published: 25th Feb 2022
Publication Type: Journal
PubMed ID: 35197636
Citation: Nature. 2022 Mar;603(7899):138-144. doi: 10.1038/s41586-022-04427-4. Epub 2022 Feb 23.
Abstract (Expand)
Authors: J. Schmidt, J. Goergens, T. Pochechueva, A. Kotter, N. Schwenzer, M. Sitte, G. Werner, J. Altmuller, H. Thiele, P. Nurnberg, J. Isensee, Y. Li, C. Muller, B. Leube, H. C. Reinhardt, T. Hucho, G. Salinas, M. Helm, R. D. Jachimowicz, D. Wieczorek, T. Kohl, S. E. Lehnart, G. Yigit, B. Wollnik
Date Published: 22nd Sep 2021
Publication Type: Journal
PubMed ID: 34545459
Citation: Hum Genet. 2021 Dec;140(12):1679-1693. doi: 10.1007/s00439-021-02347-3. Epub 2021 Sep 20.
Abstract
Authors: J. Peper, D. Kownatzki-Danger, G. Weninger, F. Seibertz, J. R. D. Pronto, H. Sutanto, D. Pacheu-Grau, R. Hindmarsh, S. Brandenburg, T. Kohl, G. Hasenfuss, M. Gotthardt, E. A. Rog-Zielinska, B. Wollnik, P. Rehling, H. Urlaub, J. Wegener, J. Heijman, N. Voigt, L. Cyganek, C. Lenz, S. E. Lehnart
Date Published: 19th Mar 2021
Publication Type: Journal
PubMed ID: 33486968
Citation: Circ Res. 2021 Mar 19;128(6):e102-e120. doi: 10.1161/CIRCRESAHA.119.316547. Epub 2021 Jan 25.
Abstract (Expand)
Authors: L. M. Iyer, S. Nagarajan, M. Woelfer, E. Schoger, S. Khadjeh, M. P. Zafiriou, V. Kari, J. Herting, S. T. Pang, T. Weber, F. S. Rathjens, T. H. Fischer, K. Toischer, G. Hasenfuss, C. Noack, S. A. Johnsen, L. C. Zelarayan
Date Published: 6th Apr 2018
Publication Type: Journal
PubMed ID: 29394407
Citation: Nucleic Acids Res. 2018 Apr 6;46(6):2850-2867. doi: 10.1093/nar/gky049.