SEEK ID: https://goeseek.gwdguser.de/people/1
Locations:
United Kingdom
,
Germany
ORCID:
https://orcid.org/0000-0002-9895-2469
Joined: 2nd Feb 2022
Expertise: Data Management, Bioinformatics, Molecular Biology, Microbiology
Tools: Proteomics, sequencing, RNA-seq, Genomics
Roles
Admin
PAL
Project administrator
- CRC1002: Modulatory Units in Heart Failure
- Cardiomyocyte tissues
- TRR 274: Checkpoints of Central Nervous System Recovery
- SFB 1190: Compartmental Gates and Contact Sites in Cells
- MBExC: Multiscale Bioimaging
- CRC 1565: Molecular mechanisms and interplay of gene expression processes
- Default Project - for test purposes
- CRC 1690: Disease Mechanisms and Functional Restoration of Sensory and Motor Systems
- SFB1690 Optogenetics Data - Demo project
Asset housekeeper
Asset gatekeeper
Programme administrator
Their tagsRelated items
- Programmes (4)
- Projects (9)
- Institutions (3)
- Investigations (21+56)
- Studies (1+267)
- Assays (4+343)
- Data files (0+1049)
- Publications (4)
- Sample types (0+2)
- Samples (0+16)
- Collections (0+1)
For test purposes only.
Projects: Default Project - for test purposes, TAVI test project, SFB1690 Optogenetics Data - Demo project
Web page: Not specified
Projects: MBExC: Multiscale Bioimaging
Web page: https://www.wikidata.org/wiki/Q48975698
Projects: Cardiomyocyte tissues, 12 months EHM project (Dittrich, Zimmermann)
Web page: Not specified
Projects: CRC1002: Modulatory Units in Heart Failure, TRR 274: Checkpoints of Central Nervous System Recovery, SFB 1190: Compartmental Gates and Contact Sites in Cells
Web page: Not specified
https://gepris.dfg.de/gepris/projekt/469281184
While gene expression was traditionally viewed as a linear pathway of consecutive steps, we now know that genome organization and transcription, RNA processing and modification, RNA-protein complex assembly, translation and quality control are highly interconnected processes. Many cross-regulation events occur even between non-consecutive steps of gene expression, and even between processes taking place in different cellular compartments.
This paradigm ...
Programme: This Project is not associated with a Programme
Public web page: https://sfb1565.uni-goettingen.de/
Organisms: Not specified
https://rdp.sfb274.de/ (Research Data Platform) https://gepris.dfg.de/gepris/projekt/408885537 (DFG Gepris entry) The central nervous system (CNS) is a terminally differentiated tissue, where any insult carries a heightened risk - yet the tissue response to these insults is variable and can range from irreversible destruction to almost complete recovery. The rules that instruct these divergent outcomes are still unknown. The aim of this CRC is therefore to understand the biology of the multicellular ...
Programme: Sonderforschungsbereiche/Collaborative Research Centers
Public web page: https://www.sfb274.de/
Programme: This Project is not associated with a Programme
Public web page: https://sfb1690.uni-goettingen.de/
Organisms: Not specified
Programme: Default programme - for test purposes
Public web page: Not specified
Organisms: Not specified
Project for the demostration of SEEK features for use with the Optogenetics Data from SFB1690 and EKFZ.
Programme: Default programme - for test purposes
Public web page: Not specified
Organisms: Not specified
Programme: Cluster of Excellence
Public web page: https://mbexc.de/
Organisms: Human, Mouse, Rat, Saccharomyces cerevisiae (Yeast)
https://sfb1002.med.uni-goettingen.de/ (Research Data Platform) https://gepris.dfg.de/gepris/projekt/193793266?language=en (DFG Gepris entry) With a prevalence of between two and four percent, heart failure remains one of the most common diseases in Europe. Although tremendous progress has been made in its treatment, the morbidity and mortality of affected patients remains high. Advanced heart failure can still only be treated palliatively.We define modulatory units as cell-based and/or genetic ...
Programme: Sonderforschungsbereiche/Collaborative Research Centers
Public web page: https://herzzentrum.umg.eu/forschung/forschungsverbuende/sfb-1002/
Start date: 1st Jul 2012
End date: 30th Jun 2024
ROR ID: Not specified
Department: Not specified
Country:
United Kingdom
City: Not specified
Web page: Not specified
ROR ID: https://ror.org/021ft0n22
Department: Not specified
Country:
Germany
City: Göttingen
Web page: https://www.umg.eu/
ROR ID: https://ror.org/01y9bpm73
Department: Not specified
Country:
Germany
City: Göttingen
Web page: http://www.uni-goettingen.de/en/1.html
https://gepris.dfg.de/project/515959218
started in 2023
Der Einfluss von RNA-Modifikationen auf die Entstehung von tRNA-Fragmenten, deren molekularen Interaktionen und diversen Funktionen in der Regulation der Genexpression
Snapshots: No snapshots
https://gepris.dfg.de/gepris/projekt/515958940
started in 2023
Analyse des strukturellen und funktionellen Zusammenspiels der Proteinsynthese- und ISG15-Modifizierungsmaschinerie
Snapshots: No snapshots
https://gepris.dfg.de/project/515958232
2023-2026
Fortgeschrittene Einzelmolekül-Fluoreszenzspektroskopie für die Untersuchung von RNA- und Proteindynamik
Snapshots: No snapshots
https://gepris.dfg.de/project/515957059
started in 2023
Geschwindigkeit, Genauigkeit und Qualitätskontrolle der Translation
Snapshots: No snapshots
https://gepris.dfg.de/gepris/projekt/515955085
started in 2023
Posttranslationale Regulation von Ribonukleasen und ihrer Funktionen in Prozessierung und Abbau unterschiedlicher Klassen von RNAs unter Zellstress
Snapshots: No snapshots
https://gepris.dfg.de/gepris/projekt/515954611?language=en
2023-2026
RNase-vermittelte Regulation des Gleichgewichts zwischen RNA-Abbau und Transkription
Snapshots: No snapshots
https://gepris.dfg.de/gepris/projekt/515954202?language=en
started in 2023
Die mRNA Wächter Protein-vermittelte rRNA und snoRNA Qualitätskontrolle
Snapshots: No snapshots
https://gepris.dfg.de/project/515953039
2023-2026
Strukturelle und mechanistische Analyse des nukleozytoplasmatischen Transports von RNAs
Snapshots: No snapshots
Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Corresponding publication:
https://sfb1002.med.uni-goettingen.de/production/literature/publications/201
(https://doi.org/10.1093/nar/gky049)
Submitter: Harald Kusch
Investigation: CRC1002 Project C07 (2016-2024)
Assays: ChIP Seq, RNA Seq, echocardiographic analysis, immunocytochemistry
Snapshots: No snapshots
Activation of the evolutionarily conserved, developmental Wnt pathway has been reported during maladaptive cardiac remodeling. Although the function of Wnt-transcriptional activation in development is well described, the consequences of Wnt pathway activation, as well as its cardiac-specific regulatory role in the adult heart, is largely unknown. We show that β-catenin and Transcription factor 7-like 2 (TCF7L2), the main nuclear components of the Wnt-transcriptional cascade, and their transcriptional ...
Submitter: Harald Kusch
Assay type: Gene Expression Profiling
Technology type: Chip-seq
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
Summary: Activation of the evolutionarily conserved, developmental Wnt pathway has been reported during maladaptive cardiac remodeling. Although the function of Wnt-transcriptional activation in development is well described, the consequences of Wnt pathway activation, as well as its cardiac-specific regulatory role in the adult heart, is largely unknown. We show that β-catenin and Transcription factor 7-like 2 (TCF7L2), the main nuclear components of the Wnt-transcriptional cascade, and their ...
Submitter: Harald Kusch
Assay type: Gene Expression Profiling
Technology type: Rna-seq
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 3 hidden items
Snapshots: No snapshots
Transaortic constriction (TAC) was done in 12-weeks-old mice. Pre-anesthetic and anesthetic agents are listed in Supplemental Table S2. The intervention was performed by tying a braided 5–0 polyviolene suture (Hugo Sachs Electronik) ligature around the aorta and a blunted 26-gauge needle and subsequent removal of the needle. For sham controls, the suture was not tied. To determine the level of pressure overload by aortic ligation, a high frequency Doppler probe was used to measure the ratio between ...
Submitter: Harald Kusch
Assay type: Echocardiographic analysis
Technology type: micro-ultrasound imaging
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
Submitter: Harald Kusch
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
Abstract (Expand)
Authors: L. Hosang, R. C. Canals, F. J. van der Flier, J. Hollensteiner, R. Daniel, A. Flugel, F. Odoardi
Date Published: 25th Feb 2022
Publication Type: Journal Article
PubMed ID: 35197636
Citation: Nature. 2022 Mar;603(7899):138-144. doi: 10.1038/s41586-022-04427-4. Epub 2022 Feb 23.
Abstract (Expand)
Authors: J. Schmidt, J. Goergens, T. Pochechueva, A. Kotter, N. Schwenzer, M. Sitte, G. Werner, J. Altmuller, H. Thiele, P. Nurnberg, J. Isensee, Y. Li, C. Muller, B. Leube, H. C. Reinhardt, T. Hucho, G. Salinas, M. Helm, R. D. Jachimowicz, D. Wieczorek, T. Kohl, S. E. Lehnart, G. Yigit, B. Wollnik
Date Published: 22nd Sep 2021
Publication Type: Journal Article
PubMed ID: 34545459
Citation: Hum Genet. 2021 Dec;140(12):1679-1693. doi: 10.1007/s00439-021-02347-3. Epub 2021 Sep 20.
Abstract
Authors: J. Peper, D. Kownatzki-Danger, G. Weninger, F. Seibertz, J. R. D. Pronto, H. Sutanto, D. Pacheu-Grau, R. Hindmarsh, S. Brandenburg, T. Kohl, G. Hasenfuss, M. Gotthardt, E. A. Rog-Zielinska, B. Wollnik, P. Rehling, H. Urlaub, J. Wegener, J. Heijman, N. Voigt, L. Cyganek, C. Lenz, S. E. Lehnart
Date Published: 19th Mar 2021
Publication Type: Journal Article
PubMed ID: 33486968
Citation: Circ Res. 2021 Mar 19;128(6):e102-e120. doi: 10.1161/CIRCRESAHA.119.316547. Epub 2021 Jan 25.
Abstract (Expand)
Authors: L. M. Iyer, S. Nagarajan, M. Woelfer, E. Schoger, S. Khadjeh, M. P. Zafiriou, V. Kari, J. Herting, S. T. Pang, T. Weber, F. S. Rathjens, T. H. Fischer, K. Toischer, G. Hasenfuss, C. Noack, S. A. Johnsen, L. C. Zelarayan
Date Published: 6th Apr 2018
Publication Type: Journal Article
PubMed ID: 29394407
Citation: Nucleic Acids Res. 2018 Apr 6;46(6):2850-2867. doi: 10.1093/nar/gky049.