https://sfb1002.med.uni-goettingen.de/ (Research Data Platform)
https://gepris.dfg.de/gepris/projekt/193793266?language=en (DFG Gepris entry)
With a prevalence of between two and four percent, heart failure remains one of the most common diseases in Europe. Although tremendous progress has been made in its treatment, the morbidity and mortality of affected patients remains high. Advanced heart failure can still only be treated palliatively.We define modulatory units as cell-based and/or genetic principles that organize and control important cardiac functions, which are subject to disruption and cause cardiac dysfunction in heart failure models and humans, and therefore represent treatment targets. For example, during the second funding period, CRC 1002 contributed to the characterization and identification of molecular mechanisms that affect microdomain structures of excitation-contraction coupling processes and associated organelles, including mitochondria. We have continued to develop advanced imaging techniques for cells, tissues and organs, as well as in vivo analyses up to the in-depth characterization of patient cohorts. CRC 1002 provides an important platform for analyzing the molecular mechanisms of intracellular calcium and sodium signaling in human tissue samples as well as human stem cell and animal models. In addition, gene editing protocols were developed for cutting-edge mechanistic interrogation of human iPSC-derived cardiomyocyte and fibroblast models, as well as for studies using engineered heart muscle. A central goal of CRC 1002 is to identify new treatment targets in heart failure and to develop therapeutic strategies. The first and second funding periods have uncovered such novel targets, of which some are already at a clinical trial level. For example, we identified methylation of the RASAL1 gene as a key pathogenetic mechanism in myocardial fibrosis and from this developed a new therapeutic antifibrotic strategy. During the third funding period mechanisms underlying the transition from compensated hypertrophy to cardiac failure, in particular myocardial fibrosis, impaired calcium cycling, and altered energy metabolism will be evaluated. The unique resources available in the human biobank will provide a deeper insight into the mechanisms of myocardial reverse remodeling and clinical improvement after relief of pressure overload following aortic valve implantation performed to treat pressure overload-induced heart failure. Moreover, based on findings from the previous funding periods, we will study a new antifibrotic treatment in patients with aortic stenosis and a high degree of myocardial fibrosis.In summary, CRC 1002 will continue to improve the in-depth and mechanistic understanding of the pathophysiology of heart failure. Most importantly, we will continue to strive to close conceptual gaps and to improve treatment of heart failure patients with new therapeutic options. By monitoring the outcome of selected interventions and a thorough characterization of patient data and biosamples prior to these interventions, our studies have the potential to provide new perspectives towards a more effective, individualized treatment of heart failure.
Programme: Sonderforschungsbereiche/Collaborative Research Centers
SEEK ID: https://goeseek.gwdguser.de/projects/2
Public web page: https://herzzentrum.umg.eu/forschung/forschungsverbuende/sfb-1002/
FAIRDOM PALs: No PALs for this Project
Project start date: 1st Jul 2012
Project end date: 30th Jun 2024
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- People (11)
- Programmes (1)
- Institutions (1)
- Investigations (1+3)
- Studies (1+10)
- Assays (4+17)
- Data files (0+51)
- Publications (7)
- Sample types (0+2)
- Samples (0+16)
Projects: CRC1002: Modulatory Units in Heart Failure
Institutions: University Medical Center Göttingen
https://orcid.org/0000-0002-3015-951XExpertise: Bioinformatics, Molecular Biology
Tools: R, RNA-seq, Single Cell analysis, PCR, Mouse model
I am a Ph.D. student in the group of Dr. Laura Zelarayan at the Institute of Pharmacology and Toxicology (UMG). I am working to decipher the transcription factors (TF) involved in the transition to heart failure using a murine model. For that, I am analyzing Single-Cell RNAseq and RNAseq data to find the most critical genes implied in regulating this pathological remodeling. Afterward, an inference based on the transcriptome signature would suggest TF targets. Those targets would be confirmed via ...
Projects: CRC1002: Modulatory Units in Heart Failure, Cardiomyocyte tissues, TRR 274: Checkpoints of Central Nervous System Recovery, SFB 1190: Compartmental Gates and Contact Sites in Cells, MBExC: Multiscale Bioimaging, CRC 1565: Molecular mechanisms and interplay of gene expression processes
Institutions: University Medical Center Göttingen
https://orcid.org/0000-0003-1236-0815Projects: Default Project - for test purposes, CRC1002: Modulatory Units in Heart Failure, Cardiomyocyte tissues, TRR 274: Checkpoints of Central Nervous System Recovery, SFB 1190: Compartmental Gates and Contact Sites in Cells, MBExC: Multiscale Bioimaging, CRC 1565: Molecular mechanisms and interplay of gene expression processes
Institutions: Default Institution, University Medical Center Göttingen, Georg-August-Universität Göttingen
https://orcid.org/0000-0002-9895-2469Expertise: Data Management, Bioinformatics, Molecular Biology, Microbiology
Tools: Proteomics, sequencing, RNA-seq, Genomics
Projects: CRC1002: Modulatory Units in Heart Failure
Institutions: University Medical Center Göttingen
Projects: Default Project - for test purposes, CRC1002: Modulatory Units in Heart Failure, Cardiomyocyte tissues, TRR 274: Checkpoints of Central Nervous System Recovery, SFB 1190: Compartmental Gates and Contact Sites in Cells, MBExC: Multiscale Bioimaging, TAVI test project, 12 months EHM project (Dittrich, Zimmermann), CRC 1565: Molecular mechanisms and interplay of gene expression processes
Institutions: University Medical Center Göttingen
https://orcid.org/0000-0002-6184-3891Expertise: Data Management, Molecular Biology, Genetics
Projects: CRC1002: Modulatory Units in Heart Failure, TRR 274: Checkpoints of Central Nervous System Recovery, SFB 1190: Compartmental Gates and Contact Sites in Cells
Web page: Not specified
https://gepris.dfg.de/gepris/projekt/318243743 Title: Wnt/beta-catenin/TCF-dependent transcriptional regulation in heart failure (Wnt/beta-catenin/TCF-abhängige Transkriptionsregulation in der Herzinsuffizienz) Wnt/ß-catenin activation results in the development of cardiac dysfunction. In this project, the hypothesis will be tested that enhanced Wnt/ß-catenin activity triggers a cell-specific gene expression programs in cardiomyocytes (CM) and cardiac fibroblasts (FB), which contribute to ...
Submitter: Harald Kusch
Studies: A context-specific cardiac Beta-catenin and GATA4 interaction influences...
Assays: ChIP Seq, RNA Seq, echocardiographic analysis, immunocytochemistry
Snapshots: No snapshots
Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Corresponding publication:
https://sfb1002.med.uni-goettingen.de/production/literature/publications/201
(https://doi.org/10.1093/nar/gky049)
Submitter: Harald Kusch
Investigation: CRC1002 Project C07 (2016-2024)
Assays: ChIP Seq, RNA Seq, echocardiographic analysis, immunocytochemistry
Snapshots: No snapshots
Activation of the evolutionarily conserved, developmental Wnt pathway has been reported during maladaptive cardiac remodeling. Although the function of Wnt-transcriptional activation in development is well described, the consequences of Wnt pathway activation, as well as its cardiac-specific regulatory role in the adult heart, is largely unknown. We show that β-catenin and Transcription factor 7-like 2 (TCF7L2), the main nuclear components of the Wnt-transcriptional cascade, and their transcriptional ...
Submitter: Harald Kusch
Assay type: Gene Expression Profiling
Technology type: Chip-seq
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
Summary: Activation of the evolutionarily conserved, developmental Wnt pathway has been reported during maladaptive cardiac remodeling. Although the function of Wnt-transcriptional activation in development is well described, the consequences of Wnt pathway activation, as well as its cardiac-specific regulatory role in the adult heart, is largely unknown. We show that β-catenin and Transcription factor 7-like 2 (TCF7L2), the main nuclear components of the Wnt-transcriptional cascade, and their ...
Submitter: Harald Kusch
Assay type: Gene Expression Profiling
Technology type: Rna-seq
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 3 hidden items
Snapshots: No snapshots
Transaortic constriction (TAC) was done in 12-weeks-old mice. Pre-anesthetic and anesthetic agents are listed in Supplemental Table S2. The intervention was performed by tying a braided 5–0 polyviolene suture (Hugo Sachs Electronik) ligature around the aorta and a blunted 26-gauge needle and subsequent removal of the needle. For sham controls, the suture was not tied. To determine the level of pressure overload by aortic ligation, a high frequency Doppler probe was used to measure the ratio between ...
Submitter: Harald Kusch
Assay type: Echocardiographic analysis
Technology type: micro-ultrasound imaging
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
Submitter: Harald Kusch
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: CRC1002 Project C07 (2016-2024)
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Snapshots: No snapshots
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Date Published: 19th Oct 2022
Publication Type: Journal
PubMed ID: 36254806
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Date Published: 22nd Sep 2021
Publication Type: Journal
PubMed ID: 34545459
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Abstract
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Publication Type: Journal
PubMed ID: 33486968
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PubMed ID: 32623905
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Publication Type: Journal
PubMed ID: 32361827
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PubMed ID: 32146539
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Publication Type: Journal
PubMed ID: 29394407
Citation: Nucleic Acids Res. 2018 Apr 6;46(6):2850-2867. doi: 10.1093/nar/gky049.